Research interests | Publications | Software | Teaching | Short CV
Students interested in machine learning tasks applied (or not!) to medicine, namely, time-series classification and clustering, regularization of high-dimensional data and survival analysis, please contact me!
Catarina Oliveira, Causal Inference via Information Theory, MECD
Supervised with Mário A. T. Figueiredo (2020/21, 2nd semester, on-going work)
Maria Luísa Costa, Joint models for the analysis of Electronic Medical Records, MEBiom
Supervised with Susana Vinga (2020/21, 2nd semester, on-going work)
Jorge Pacheco, Analysis of temporal data of rheumatic diseases patients through model-based methods, MEIC
Supervised with Susana Vinga (2020/21, 2nd semester, on-going work)
Ana Beatriz Correia, Analysis of temporal data of rheumatic diseases patients through model-based methods, MEIC
Supervised with Susana Vinga (2019/20, 2nd semester, on-going work)
João Santos, Dynamic Bayesian networks for the analysis of time-series data, MEEC
Supervised with Susana Vinga (2019/20, 2nd semester, on-going work)
Alexandre Abreu, Analysis of temporal data of rheumatic diseases patients through model-based methods, MEEC
Supervised with Susana Vinga (2019/20, 2nd semester, on-going work)
Ana Rita Martins, Machine Learning methods for clinical decision support in rheumatology, MEBiom
Supervised with Susana Vinga (2019/20, 2nd semester, on-going work)
Joana Palhinha, Machine Learning methods for finding predictors of Rheumatoid Arthritis treatment response, MEBiom
Supervised with Susana Vinga (2019/20, 1st semester, concluded in January 2021)
Vasco Candeias, Cloud-based web application for multivariate time
series analysis: A language-agnostic integrative architecture for short- and long-running machine
learning algorithms, MEEC
Supervised with Susana Vinga (2019/20, 2nd semester, concluded in January 2021)
Tiago Leão, Profiling ALS disease progression through data mining techniques, MEEC
Supervised with Sara C. Madeira (2019/20, 2nd semester, concluded in December 2020)
Software: sdtDBN and sdtDBNsGUI
Papers in co-authorship: J BIOMED INFORM
André Ferreira, Predictive Therapy for Rheumatic Diseases Using Interpretable Recurrent Neural Network, MEEC
Supervised with Susana Vinga (2018/19, 2nd semester, concluded in October 2020)
Papers in co-authorship: AHIA'20
Carolina Barata, Longitudinal and survival analysis for rheumatic diseases' prognosis, MEBiom
Supervised with Susana Vinga (2019/20, 1st semester, concluded in October 2020)
Papers in co-authorship: J MED INTERNET RES (accepted)
José Borges, Clustering multivariate time series using dynamic Bayesian networks, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in October 2020)
Xia Anbang, Latent Factors of Multi-Omics Data and Clustering, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in December 2019)
Manuel Anacleto, MSAX: Multivariate symbolic aggregate approximation for time series classification, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in November 2019)
Software: MSAX
Papers in co-authorship: CIBB'19
Guilherme Moura, Time series data imputation - Comparison of Dynamic Time Warping with Needleman-Wunsch algorithm, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in November 2019)
Sara Vieira, Analysis of heterogeneous and high-dimensional data of rheumatic diseases patients through clustering methods, MEEC
Supervised with Susana Vinga (2018/19, 2nd semester, concluded in November 2019)
João Rodrigues, Time series analysis using restricted Boltzmann machines and dynamic Bayesian networks, MEEC
Supervised with Paulo Mateus (2019/19, 2nd semester, concluded in November 2019)
Software: BLADE
Joana Godinho, Latent variable modelling and variational inference for single-cell RNA-seq differential expression analysis, MEIC
Supervised with Susana Vinga (2018/19, 2nd semester, concluded in October 2019)
Software: SIENA and ext-ZINBayes
Papers in co-authorship: ICCABS'20 (accepted)
Pedro Martinho, Network-based Regularization for Survival Analysis, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in November 2018)
Jorge Serras, Outlier detection for multivariate time series, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in November 2018)
Software: METEOR
Papers in co-authorship: APPLIED SCIENCES
Luís Rei, Unveiling Interpretable Behavior in Two-Way High-Dimensional Clinical Data, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in November 2018)
Samuel Arcadinho, Model-based Learning in Multivariate Time Series, MEEC
Supervised with Helena Aidos (2017/18, 2nd semester, concluded in November 2018)
Software: learnDBN and learnDBM
Pedro Ferreira, Probabilistic Modelling of Single-cell Transcriptomics, MEEC
Supervised with Susana Vinga (2017/18, 2nd semester, concluded in October 2018)
Software: ZINBayes
Papers in co-authorship: CIBB'18
João Villa de Brito, Unravelling breast and prostate common gene signatures by Bayesian network learning, MEEC
Supervised with Susana Vinga (2017/18, 1st semester, concluded in July 2018)
Papers in co-authorship: CIBB'18
Orlando Vaz, Profiling the amyotrophic lateral sclerosis disease progression through data mining techniques, MEEC
Supervised with Helena Aidos (2017/18, 1st semester, concluded in June 2018)
Kishan Rama, Temporal sequence alignment and agglomerative clustering for the analysis of medical longitudinal data, MEEC
Supervised with Susana Vinga (2017/18, 1st semester, concluded in June 2018)
Software: AliClu
Papers in co-authorship: BMC MED INFORM DECIS
João Beirão, Multivariate correlations for early classification, MEEC
Supervised with Paulo Mateus (2017/18, 1st semester, concluded in May 2018)
Software: MCEC
Papers in co-authorship: ENTROPY
Margarida Sousa, Advances in Probabilistic Graphical Models, MMA
Supervised with Mário A. T. Figueiredo (2016/17, 2nd semester, concluded in December 2017)
Software: cDBN and bcDBN
Papers in co-authorship: ENTROPY and LOD'18
Hugo Ambrósio, Modelling cancer progression through joint models for longitudinal and time-to-event data, MEEC
Supervised with Susana Vinga (2016/17, 2nd semester, concluded in December 2017)
Papers in co-authorship: BMC MED INFORM DECIS
Cátia Botas, Feature analysis to predict treatment outcome in rheumatoid arthritis, MEEC
Supervised with Susana Vinga (2016/17, 2nd semester, concluded in November 2017)
Rui Guerra, Model Selection for Clustering of Pharmacokinetic Responses with the Minimum Description Length, MEEC
Supervised with Paulo Mateus (2016/17, 2nd semester, concluded in November 2017)
Software: PKClusteringMDL
Papers in co-authorship: COMPUT METH PROG BIO
João Freitas, Analysis of Electronic Medical Records of Rheumatoid Arthritis Patients on Biological Therapies, MEBiom
Supervised with Helena Canhão (2014/15, 1st semester, concluded in June 2015)
Inês Nolasco, Biclustering-based imputation in longitudinal data, MEEC
Supervised with Sara C. Madeira (2014/15, 1st semester, concluded in May 2015)
João Pinto, Outlier Detection in Survival Analysis, MEEC
Supervised with Susana Vinga (2014/15, 1st semester, concluded in May 2015)
Software: survBootOutliers
Papers in co-authorship: BIOINFORMATICS'15 and MOD'15
José Monteiro, Learning from short multivariate time series, MEEC
Supervised with Susana Vinga (2013/14, 2nd semester, concluded in November 2014)
Software: tDBN
Papers in co-authorship: UAI'15
José Jorge dos Reis, Prognostic prediction in patients with Amyotrophic Lateral Sclerosis using graphical models, MEIC
Supervised with Sara C. Madeira (2013/14, 2nd semester, concluded in November 2014)
Cecília Nunes, Learning from imbalanced data, MEBiom
Supervised with Sara C. Madeira (2011/12, 2nd semester, concluded in December 2012)
Papers in co-authorship: EPIA'13
Michael Madeira, Master Project in Information and Software Engineering, MEIC
Supervised with Susana Vinga (2020/21, 2nd semester, on-going work)
Jorge Pacheco, Master Project in Information and Software Engineering, MEIC
Supervised with Susana Vinga (2020/21, 1st semester)
Tiago Leão, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Sara C. Madeira (2019/20, 1st semester)
Vasco Candeias, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2019/20, 1st semester)
Nuno Silva, Master Project in Information and Software Engineering, MEIC
Supervised with Susana Vinga (2019/20, 1st semester)
Ana Beatriz Correia, Master Project in Information and Software Engineering, MEIC
Supervised with Susana Vinga (2019/20, 1st semester)
Matheus Silva, Master Project in Information and Software Engineering, MEIC
Supervised with Susana Vinga (2019/20, 1st semester)
Joana Godinho, Master Project in Information and Software Engineering, MEIC
Supervised with Susana Vinga (2018/19, 1st semester)
André Ferreira, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2018/19, 1st semester)
João Rodrigues, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Paulo Mateus (2018/19, 1st semester)
Guilherme Moura, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2017/18, 1st semester)
Manuel Anacleto, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2017/18, 1st semester)
José Borges, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2017/18, 1st semester)
Luís Rei, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2017/18, 1st semester)
Samuel Arcadinho, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Helena Aidos (2017/18, 1st semester)
Kishan Rama, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2016/17, 2nd semester)
Pedro Ferreira, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2016/17, 2nd semester)
Frederico Nunes, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Sara Silva (2016/17, 1st semester)
Cátia Botas, Introduction to the Research in Electrical and Computer Engineering, MEEC
Supervised with Susana Vinga (2016/17, 1st semester)
Inês Nolasco, Introdução à Investigação e ao Projecto em Engenharia Electrotécnica e de Computadores, MEEC
Supervised with Sara C. Madeira (2013/14, 2nd semester)
José Monteiro, Introdução à Investigação e ao Projecto em Engenharia Electrotécnica e de Computadores, MEEC
Supervised with Susana Vinga (2013/14, 1st semester)
José Jorge dos Reis, Projecto de Mestrado em Engenharia Informática e de Computadores, MEIC
Supervised with Sara C. Madeira (2013/14, 1st semester)
My teaching webpage at IST.
Research interests | Publications | Software | Teaching | Short CV